Scaffold Ga0073350_119129

Overview

Basic Information

• Taxon OID: 3300005223
• Scaffold ID: Ga0073350_119129
• Source Dataset Name: Sylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22619
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (60.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.699217
  • Long. (^o): -110.767467
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073350_11912910	F087442	GAGG	MMKEGLVKVRNLIVDCKPCYVAGTGFTKDDVYVVSEGTVVFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESCMVTKL*
Ga0073350_11912911	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTISNPDLMMVRLGRDIYIVTSQLKLLIPVEPIKVLLSSETSKVYNEALSQGNEVKPV*
Ga0073350_11912912	F076263	AGGA	MLSAEDLSAILDDLEDMCARIPDGVTFHPTLEIHRHYANEEATYIKFDCRNHKYILTIVRAGVAKTTRVSSREQLFKRVFPEYSPGYNGNYTEEFWGGE*
Ga0073350_11912913	F080247	N/A	MIVWGKLIECIIDADVNYLNGEVFNSQLRIKGKFLTFGNLYTLEKTTPGGETIQICSPIDATFMAYYQGMVAVISFYFREKDIYANISLTDPDTIKEFMTMSTYYKKYGVSIPNVLDKIMYRKVPT*
Ga0073350_11912914	F061983	AGGAG	LDIPEVEGGGRVLKKFVFKVKVVPVKIFNDDELLSEQEFEHVKKTRIYKGMKVLEIKDLGYDSFWRTTHYHELVTIIEGEGLFDCYYGDVIDVKKLKNVGGIVVKEKDIPPVRTMKTLVAKWHNKKLVEEEKAYEMCTKFVM*
Ga0073350_11912916	F085905	N/A	VEEQLSFPSSRLSQFDYVGMNAYWLNVRLKYFTDPILYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNLKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHLKK*
Ga0073350_11912917	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSSTRRNQRAVNGFTTLKQVQQTVRDYLNEVSASLKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIIHTTTLTCAQVGEIINGMLKKLSGVTADPLTFTEDDGVCKATVANPLTKLSVASASTGFTVALADIFKAKTPEEVLMGK*
Ga0073350_11912920	F087445	N/A	MTSSSVKPGDELVQRLMNMSEYELKRVFKMIPIDKRLALALDTMQEYENIRSKFDNLLNSLAMNAPRVKEVVEKSRRDRKPMDRFVDMIMDMVETMMKSKAMSLTDEDREKLREKVKEMIKDEE*
Ga0073350_11912922	F076264	GAG	MSAISSAIQSMVAGLQNLFVAMIELFANAVNAIGNTLSSLAQPIGYLIGVLAVFGSLLAIIYGVFRGRSGVSGLIGGLRGFFSSFI*
Ga0073350_11912931	F070317	GGTGG	MQTTVNNMPTIEELKELNLERIVKDAQEGEVCVVNKILEGKLTDLMPLIRDPATLSQKAMEFIQRRGDDPFYLFQCTTRQGKNIKLLVRQSFNPRSTFYQLMKKYKTIKVGDEVIVFYNPEKGRYDFLL*
Ga0073350_11912932	F077502	GAG	MTDVAHIVIWIEKNLPEEGKLSELINNVFSLIEEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKEQVDAYFLKKLNDIYDKYYE*
Ga0073350_11912934	F077499	AGGTGG	MADLFVFPNESLKPVNYPNITNAEIIFVLTISIPIGSHPESEAPMDEKVRFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINDMYDVKELINKVKDVECAKDLKTLNVTLTEAKRYIYPDISLSKYASAQAKELGIKKYEYYAKLFQCYIETDKNMDMLTLFRISNLVFNFLRINNLSYIIKKMQFKDNNISRIAEKIKQRVKITLDAMADRKPVELNEDILNSITIKIKEIDLG*
Ga0073350_11912935	F056742	N/A	LKLADCRYKCKQSYFRRSLFVRMFIVEVEKVYQVKIKSCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKELGYRPLAYNENL*
Ga0073350_1191298	F075084	GAG	VRPCQKDLCLLYSLGADYAKLIDFTRENPTGKLFEAGGRAMSYASGLMRLWYGYDTNSLLERSLRRILRYSVIYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNNENVSKVLTKMTEMCSTYEVK*
Ga0073350_1191299	F080245	N/A	VIFVWSARVVIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTSIEDLNYPLNTINNVFT*