Scaffold Ga0073351_107304

Overview

Basic Information

• Taxon OID: 3300005222
• Scaffold ID: Ga0073351_107304
• Source Dataset Name: Norris Geyser Basin Perpetual Spouter 2 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1420
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Tepid (25-34C) → Unclassified → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.726683
  • Long. (^o): -110.70915

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038776	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073351_1073042	F038776	N/A	LETVAFDIVRFKDGDKGAELWQVQSADDGDYIVALYDEDEVEKTASANPWGVFVSKNGNEVQISYKGDPLVRLASSKLGIPSSELHKAEQYLPEKLATNKKLVKALLSELSEAARHEVSKRYPELV*