NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069001_10223667

Scaffold Ga0069001_10223667


Overview

Basic Information
Taxon OID3300005215 Open in IMG/M
Scaffold IDGa0069001_10223667 Open in IMG/M
Source Dataset NameWetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.15012Long. (o)-122.438774Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013099Metagenome274Y
F039591Metagenome163Y
F062168Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0069001_102236671F039591GAGGMKLMFLLIWFDAVPEQGVRYHHLGTFDNETKCMTELRIASVLVNDKLETIECIGVRIP*
Ga0069001_102236672F062168AGGAGMNDLKDFLKDMGLESVHPKPSATKPDYMQPGYYVDPRNANGEVPF*
Ga0069001_102236673F013099N/ALVLVPEQGIRYYHLGTYDNETLCNAALRDAAVMVNDKNETVECIGVQVDN*

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