NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072941_1130563

Scaffold Ga0072941_1130563


Overview

Basic Information
Taxon OID3300005201 Open in IMG/M
Scaffold IDGa0072941_1130563 Open in IMG/M
Source Dataset NameMicrocerotermes gut microbial communities from Indooroopilly, Australia - IN01 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1612
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → Treponema zuelzerae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location NameIndooroopilly, Australia
CoordinatesLat. (o)-27.5Long. (o)152.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090568Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0072941_11305633F090568AGGAGVYYSNEMIDDLIHGVSIDKDMYANVQIHNVAKMLKKHKSCYKMFGVYWWAVKDALRKYVDNGAWYCGKQDDPLMKERAWHNSEFRTMLAAMYYMNEHHFEITSSHTWYDKNGESHLYTLSDPDADGE*

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