NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072941_1040835

Scaffold Ga0072941_1040835


Overview

Basic Information
Taxon OID3300005201 Open in IMG/M
Scaffold IDGa0072941_1040835 Open in IMG/M
Source Dataset NameMicrocerotermes gut microbial communities from Indooroopilly, Australia - IN01 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2405
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Kalotermitidae → Cryptotermitinae → Cryptotermes → Cryptotermes secundus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location NameIndooroopilly, Australia
CoordinatesLat. (o)-27.5Long. (o)152.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005119Metagenome / Metatranscriptome411Y
F092281Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0072941_10408351F092281GGAGGMEITSFLSNAHNWISPGDDKIQNYWLKAFPAITKNFSEVMEEIENVPTG*
Ga0072941_10408355F005119AGGMRHNKVCTHLRYSIRKALGIEMTDKWYKSTPKPVYEREDVTVLWHQAAYTDREVTANRPDVIIENKNI*

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