Scaffold Ga0072940_1583825

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072940_1583825

Scaffold Ga0072940_1583825

Overview

Basic Information
Taxon OID	3300005200 Open in IMG/M
Scaffold ID	Ga0072940_1583825 Open in IMG/M
Source Dataset Name	Nasutitermes gut metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Queensland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1007
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location Name	Murphy's Creek, Queensland, Australia
Coordinates	Lat. (^o)	-27.45	Long. (^o)	152.04	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003061	Metagenome	510	Y
F029274	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072940_15838251	F029274	N/A	VCSMFKILSTYSCWKKYIYMYKMQNLEGSGTPVLYIGRTVLKG*
Ga0072940_15838254	F003061	AGTAGG	MHQFLNFILFWNNTLHVSDGFSVQHQEFRTVHTASGVCQTDTVAVHRDIFL

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