Scaffold Ga0073157_1002551

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073157_1002551

Scaffold Ga0073157_1002551

Overview

Basic Information
Taxon OID	3300005194 Open in IMG/M
Scaffold ID	Ga0073157_1002551 Open in IMG/M
Source Dataset Name	E5 T6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1360
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Halodesulfurarchaeum → Halodesulfurarchaeum formicicum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E5

Source Dataset Sampling Location
Location Name	Salinas de Campos (Mallorca)
Coordinates	Lat. (^o)	39.338015	Long. (^o)	3.051796	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080946	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073157_10025511	F080946	AGGAG	MPDYYHLATTNAPRRCGGCGAAATVYDHALGFRCGACGDYPDGRRAPDTDADKIIETDD*

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