NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073159_1007610

Scaffold Ga0073159_1007610


Overview

Basic Information
Taxon OID3300005192 Open in IMG/M
Scaffold IDGa0073159_1007610 Open in IMG/M
Source Dataset NameE5 T9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)894
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E5

Source Dataset Sampling Location
Location NameSalinas de Campos (Mallorca)
CoordinatesLat. (o)39.338015Long. (o)3.051796Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075754Metagenome118N
F086685Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0073159_10076101F075754N/AISYQAGIEWHTPMNPWEPIHARVDDTSEWYAAQVDRSEYLRDSEKDADMHHRKGGVVAEGLVKAIFSGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSIRFWYLCDRSAPDFWDDEHFDGGFLSYEHFHQLPVTEPISPPPAIEVFGQA*
Ga0073159_10076102F086685N/ALVLWAVGCAAFVILGHELTHYIAWLPVATSIEYHFEEQYIEAEYPDTAFARKWAAVAGISPIIVATGLVLALIASGWNPTASWHHITASVAVVLYGISGGKSDFVALFRLVQTLRSPAAD
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