NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073161_105430

Scaffold Ga0073161_105430


Overview

Basic Information
Taxon OID3300005190 Open in IMG/M
Scaffold IDGa0073161_105430 Open in IMG/M
Source Dataset NameE2 T-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1009
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → unclassified Haloferuviridae → environmental Halophage eHP-42(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location NameSalinas de Campos (Mallorca)
CoordinatesLat. (o)39.338015Long. (o)3.051796Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054456Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0073161_1054303F054456N/AVIAMAYNPNLDFKTDTEKLTPQQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAEGNQDDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEAINFLSRTMPQFEQSEGEALIEDEPPKIHKDELSIMRWGVDPAPEDDFI*

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