Scaffold Ga0066676_10030927

Overview

Basic Information

• Taxon OID: 3300005186
• Scaffold ID: Ga0066676_10030927
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2907
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F004677	Metagenome / Metatranscriptome	428	Y
F006913	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066676_100309272	F006913	GGAGG	MDSETKRACHRLQKEVKEDAPIVLRGLASSGKRFSQRLYSAVVRGYKSWISRAKEWELSFGGRKALVSQLTRVRLRSPIYKV*
Ga0066676_100309273	F000188	GGAGG	VPVKPELAFDVCWEVYRGAREVLETKRGVSALNWKDTGKFLWRPDFRARLNEWVADFALAGQAALDGPDWASRMVMFRLYYLGLAPYENARHFLGLSEHSWVNWSEQIRHRCGRELLRRNMFPPRKYFQTCG*
Ga0066676_100309276	F004677	AGGAGG	LTRFNTQPPWEFLLSASRVSLQSYELSRLTHAANLRKEIAALLDQWVDESSAAMLARYLMDLRERTSRAPEAAPAAESLQKNGHAVSDNLFPDRAASPRANRGHA*