NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066671_10074693

Scaffold Ga0066671_10074693


Overview

Basic Information
Taxon OID3300005184 Open in IMG/M
Scaffold IDGa0066671_10074693 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1805
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009642Metagenome / Metatranscriptome315Y
F043333Metagenome156Y
F090759Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066671_100746931F043333GAGMEDFIERTLRERRSLQGALADMLAKYNRIPSGSERSMLERMIEVMKDEIALRQNTLRIAK
Ga0066671_100746932F090759N/AMTSRSMLIESLATSILDSKGIGAIWQLHLDAAYAYRTDYPIAAEAILELAEAAERVLMRRERAPISIERQQ*
Ga0066671_100746934F009642GAGGMDRLNHDKAAKLGDVLFRYMRARHRFKEKLEHPLPAHELAAFIRRGKTEFDEIYIEPEASPPIVFDGKADDVFDAIIKKRYRAIPFFDPELVAAWRHHVISDGPMPRRPGPGRLRKGGAH

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