Scaffold Ga0066671_10074693

Overview

Basic Information

• Taxon OID: 3300005184
• Scaffold ID: Ga0066671_10074693
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1805
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009642	Metagenome / Metatranscriptome	315	Y
F043333	Metagenome	156	Y
F090759	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066671_100746931	F043333	GAG	MEDFIERTLRERRSLQGALADMLAKYNRIPSGSERSMLERMIEVMKDEIALRQNTLRIAK
Ga0066671_100746932	F090759	N/A	MTSRSMLIESLATSILDSKGIGAIWQLHLDAAYAYRTDYPIAAEAILELAEAAERVLMRRERAPISIERQQ*
Ga0066671_100746934	F009642	GAGG	MDRLNHDKAAKLGDVLFRYMRARHRFKEKLEHPLPAHELAAFIRRGKTEFDEIYIEPEASPPIVFDGKADDVFDAIIKKRYRAIPFFDPELVAAWRHHVISDGPMPRRPGPGRLRKGGAH