Scaffold Ga0066678_10247616

Overview

Basic Information

• Taxon OID: 3300005181
• Scaffold ID: Ga0066678_10247616
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1152
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035245	Metagenome / Metatranscriptome	172	N
F036644	Metagenome / Metatranscriptome	169	N
F102990	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066678_102476161	F102990	N/A	CIGEFGMTGKKANRENQLNDYFRRRCSNYENFTCDRIWECALCARQSVKIEPITDDVESTTVTTRRR*
Ga0066678_102476162	F035245	AGGAGG	METLREEEVLRLEEALLKKMEERLTPLMEQAARDAARAAMQRLRLDMMAHISRHEETIQRLAKAALAEDHIPR*
Ga0066678_102476163	F036644	N/A	LEFRPYFFSNFQIDNQRKKLAVGVLVFDGVDGRVCDAALFEGRMDNLPSSGFFVDCLEIESSTGSMPKLPPELEMKNTVTVAPAGVTEDMIRSKTKDVVSGHYDATVTGVQLLHVPIVTVELLAAGKSYRKILQAATGKMIWDDTQKCSLCDQKSRAICEVCGGTVCTEHERACSSCRKHLCTDCVVTKGIVNKIPLCPTCKNA*