Scaffold Ga0066685_10018209

Overview

Basic Information

• Taxon OID: 3300005180
• Scaffold ID: Ga0066685_10018209
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4148
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069142	Metagenome	124	Y
F077585	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100182092	F069142	N/A	VKLTDAQHTHLEELLRNRPQWFKEKILADIAAEERRDEEDDTPRTGLSDYTLACLESELSIM*
Ga0066685_100182093	F077585	N/A	VDELRRLFVAGWSLGKLAKRFGVPKGTLCPRAAKERWSTERIEGQTLHDNQITLSDDPRLAEIQALVHDCKLAALEAEARTAKALALKAAKAVETIEINSLDGITQAQTYRSNLWPSVSPSIKPALDAAQRGERLVVSEETKKYVEQLKTLM*