Scaffold Ga0066685_10004261

Overview

Basic Information

• Taxon OID: 3300005180
• Scaffold ID: Ga0066685_10004261
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7162
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023811	Metagenome	208	Y
F041660	Metagenome	159	Y
F050245	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100042611	F041660	AGGA	MVSHETKRILGIGSLVLILIVLLVRILPVPFPGSHPFAFPRKPGGPSPYTPALIFNDTVSVASGTPTFNLSLTQSHSYMWRFNVTIGSVKINLTDPKTGSVFWTVGPRSTGQWRLNGTGFVSFNWTAPASTYYSLVLENQNLSSWSSNGF
Ga0066685_100042612	F023811	GGA	LLLRPRTGEAIGSVFFAFIATGLIVLVYNLDPVSNWILLAGIWAGSEVVILYLLQNQRQNEKEFQKHPVSFPNPEGGGIVGEYVMRPWQNELAELGQRYPGKKSKKQKRKD*
Ga0066685_100042617	F050245	N/A	VRAEIRYYIDAHKAQRFKLNLFELMSLNSFPNPVNQTLYFNNDEHEVPFTYSIRGRRYEQKPFKERFKLKLGDKWIFEVKNTRSEHGRFIRHKRRNEMLPLREILSRVKRVRQLGRVRIPHKLGIYAAASYSRNHFLESDRGVRVTMDEDVRYFTFEGLTGTTLGASSKAIVELKIPPGRTSSPLVRKIHGLLRRENAEQGISKKATIFNLIEDRARKSGEAYKEPSHNTEIKAKLALDSEDQDIFPRIRFDLSEGKIEGFRLSNSYPSVMETGRLYHYVQVPTHEYVRFETSGQARSATIKEDFQVVQDPYRLGNVIKRREIEEPIQSDMLKMPYKILTRRRKYFMVERDGENREYAVMMDRSTHRGHELYQLEVEDVLTSPSPRAETRSINDVASMANYLIEEYSLEPTILTKNQWLMSLPN*