Scaffold Ga0066685_10001404

Overview

Basic Information

• Taxon OID: 3300005180
• Scaffold ID: Ga0066685_10001404
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10379
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F004677	Metagenome / Metatranscriptome	428	Y
F006913	Metagenome / Metatranscriptome	362	Y
F018344	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100014041	F018344	N/A	AAVLSAVPHGGIRLLASPSYLLEGNLSVKLKRSSGEVFVWKKKEMEATPERLKELEAFRRELSELLDMPSKQ*
Ga0066685_1000140412	F006913	GGAGG	MDPETKRAWRRLTREVRESTPIVLRGLASEGKQVPRKLYSAAVRGMKSLTSRAKEWQLPFGDRKALVSRLARVRLRSPIYKA*
Ga0066685_100014044	F004677	GGAGG	VNHYKTEPPWKFLLSASRNSLQSYELSRLSHAANLRKEIGALLDLWMEENSAAMLARWLMEQAERPQQIHEAAVPGEVRQKNGDAASDNFFADLSVTPQVNRDSA*
Ga0066685_100014047	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDYRARLNEWVADFALAGKSALDGPDWASRMVLFRLYYLGLAPYETARHFLGLSETNWVNWTEQIRHRCGKELMSRGMFPPRKYFTNGT*