Scaffold Ga0066684_10035726

Overview

Basic Information

• Taxon OID: 3300005179
• Scaffold ID: Ga0066684_10035726
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2749
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066684_100357262	F003037	AGG	LWVEFKCPLCGKDLDDDKTMANFLVCSDASHGLLRFFTGDGCYFTTDQKVAEDLMKRGKRVHVVDPKEFFGNQTVNLE*
Ga0066684_100357264	F007915	GAG	MSLAEAAKPALPSSTLRSYAMIGIVFYAFGLVLNEIGNGLAQLWLVPYADTISVLGFVIALYTASLAGLGTRLTVLIGIIYGLGIFYVSEPDATYVASGLRIGSYNMTHSVGLGLIGFTMMLLIGLAFYLTRMKSARGALPKQDPGSTG*
Ga0066684_100357265	F005700	GGA	LGVRDRPWLAPGSRVVGSRRLIVDNQRFSRGPLTYRTEYALGILSLLPLLETGASRGLGWLVTILVVYIGVPLLIWSLLVDRLAFLVLRVVCRFRESSGHQYYFEKQVGMPGVSRRLLRDLRVLIFVFLLSALIVPQVTQVTPNNLVFGSNPFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNISRVTITVPAAWTSRWLASLGSLGAFVSFAVATGGNLDRAISLAFTLLVSLLPSCILAPTLFYRRLEPGIIAKIRQSKAAVTMARFFPQPSGPTLPPSSMPTLRSVKVTEETKQTSEPHP*