NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066684_10007644

Scaffold Ga0066684_10007644


Overview

Basic Information
Taxon OID3300005179 Open in IMG/M
Scaffold IDGa0066684_10007644 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5028
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027800Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0066684_100076444F027800N/ATIAILFACAMIPALAFAGKRPKSTPTPTPAPTPVTVGIHGNEPLIAAAPDGTLYISALQHVYSSTDSGATWTELLGPIYASSINLNSDSSISVDPGNRLFFTFDYPYAGTTAVCTSDDRGITWNCNPAVVPGGTDRMWTLAPTLTDDYEVTNEGLYETAFLHSTDRGSTWTPTSLGAGLFEPQTGPLLQKPGSTNVLQITKIFGTLPQEVPELKLYVYSPNSPGSIISAVRSTGLPIPAALPGAALGKDGELWVVSEQPNPAGGFSAVLAHSSDEGVTWSKLPPIPTTTTGTATFTWVAAGSPGHVGVIYYYTPDNGDPSSLTNSTWSVRWAETFNATSPAPTWTVGNIESAVHTGPICAAAGCSGDHRFAGDFITSLIDANDVAHLTWMIENMSTQKTTIRYERIQATPPSTTTGRRH*

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