Scaffold Ga0066688_10017517

Overview

Basic Information

• Taxon OID: 3300005178
• Scaffold ID: Ga0066688_10017517
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3714
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003192	Metagenome / Metatranscriptome	502	Y
F007625	Metagenome / Metatranscriptome	348	Y
F009618	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066688_100175172	F003192	AGGAG	MPTTPPEQPTTPRQPGGGYGGAGPNVNFNLAALMPTPGNAELAVYVLATLLVTIVALVDDMVNAPGWVDFFKWATAAYLISRGIAKASRVLER*
Ga0066688_100175175	F009618	AGGA	VRLRFQRRWAVVAVIAAFALTLASAAGAESYNYWWQRNMTPSDRGTDSLTARNHIYNELYFGPNAGWRSEVWEVTPAGYRHFDKWCAGNCFNAHPGYYYTYSYCANRDGSTHFVYECRDQW*
Ga0066688_100175176	F007625	GAG	VVTVRNRRLQFGAVVLAAAATAGLLTQLGLGGSDKVQIGNGSVSALAHASRTADSLPQSVLDYPFAERNFASPNGGGSRLLQVQGSLRLYGVPGKGGLMCLVEVDAAAETAGGACADHSVLRTGSIYMADLQEDGSRQVVGLVGDGHTYAEANGRRAPVQNNAFVLSHVEGGDLTVGSPTASQHVDIGG*