NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066690_10346752

Scaffold Ga0066690_10346752


Overview

Basic Information
Taxon OID3300005177 Open in IMG/M
Scaffold IDGa0066690_10346752 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025047Metagenome / Metatranscriptome203Y
F047833Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0066690_103467521F047833GAGGVHVKVIRRSEHLQQLASSRPHFPRDVYFFYEKGTGVAHFHVEAGPDGRFPVDQAAGLLAMHCMVRGQSTDDYVVMVQAE
Ga0066690_103467522F025047N/ASAAATHLLYCMTLLFGVILFLSVTLEQRPAFHIATLTFLPLVLSSIRSAIRLVGVTEAFPAARSQIMGQAWIYVLLTLFVPFLYIVNFVNSLVTRKIRWRGLAYELIGPEQTRIIQY*

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