 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005176 Open in IMG/M |
| Scaffold ID | Ga0066679_10002041 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8410 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002416 | Metagenome | 561 | Y |
| F009773 | Metagenome | 313 | Y |
| F013685 | Metagenome | 269 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066679_100020413 | F002416 | GGAGG | MKSLIEITNVPGLEDSRAAQIGRKLVTLAFGMKALNGPIAAALMLLLGVVTASAQTPTGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAYGIVTSGLKESLSTWKFITGAACFAFGGVCAAIYAFSQGDTVPLDNQF* |
| Ga0066679_100020414 | F009773 | GGAGG | MRARPVRPNIYLPVIRFGVADSDWFSVLLISCAGYLLPVPFGITVLYVPLQMWTWLIATAGSIAFFNYIRIGKKPHWLEHQVKAVFFHHRQHRAIPNGRKRSFHRGWLIDAEAQDAHGQMETGQTPTRIQLLFEENRRFQEACEEKWNSLLLTTN* |
| Ga0066679_100020416 | F013685 | AGGAG | LIKQICRQLLLGILVGVILSPSTAQAQFTVFDPAQYSLQIERQIEEANRWLERVKHYSDEINKLAEQLSTMRGVLGQAEKLVLHNDNLTRTMAQMGQTVRDVFALKRAIETMVISRLNMIKSMKTRLMSGIFDPQADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQTAQARQAGAAQEMKQAKDKLDAELAKPQAEQCAHCISDLKLEIASCEKMTADLDAQITSLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWDKLNIVKDDIFEAIQRGGVPTASPSPNP* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |