Scaffold Ga0066673_10018656

Overview

Basic Information

• Taxon OID: 3300005175
• Scaffold ID: Ga0066673_10018656
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3154
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_100186562	F041398	AGGAG	MTKSRTQVAFAICVLSAAVAVFSGAIPVPFLNTGKHCLQVTQPKGVVTLVADGTDPQPPPTPLPWLGVAS*
Ga0066673_100186563	F027294	GGA	MRVFRGFAIALMLALISLGIFILYNSMARRSAAETDSVIAGAVLFSLALTLLYYISRPTIK*
Ga0066673_100186564	F026411	AGG	MKGQEQKGSAAPMGTSPATECRAEFIFYARNQSRKLGSVEVLGDYACDFRRPDWAHRWTDWNSGRNQYLNLFLCAKHARELGLL*