Scaffold Ga0066673_10000835

Overview

Basic Information

• Taxon OID: 3300005175
• Scaffold ID: Ga0066673_10000835
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9846
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N
F019106	Metagenome	231	N
F035244	Metagenome	172	N
F097102	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_100008351	F035244	GGTGG	MSKLGAVNFPRINMISLLAGALALASVFLPWWGIDASGFGSSVSSRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISGLLAIAGSFTWNIRPLIGSFILSVLTPIVYLGVVSYSVTNSCGGQSNCLSGPFGTETVFGITLNWGFQLGFYLYLFAG
Ga0066673_100008352	F015579	GGGGG	LGSDSKKPPRPRHRFSFSGQSKRPEGSSIPRAANVTRDDILTSLTKHAHPQEPEETAPETEEAAQFQGPNATAVEARPRNRGSARGALVIFLGGFAAVWLYGYVTGAYEIPYLRGVTESPAVQVGFQLASSNPILFGAVSVSVLLGALYLLHRKKN*
Ga0066673_100008353	F097102	GAGG	MLEIEVYNCGCKVRIYAVEFGESKNDLTERPSVISDYSPCSKHRNARRIPPQEARLLKVRGEHEAFLNE*
Ga0066673_100008354	F019106	AGCAG	MASQVPLLTLAKFLVLIGGVVLLVGGILQAIDVRLMDFGTNLARLGSFTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKV*
Ga0066673_100008355	F012334	N/A	MSSKRPVELGRDARLFLLFLSEINLVMGALFFVYPSLVIGLWPWTVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVAIVLAASQGGGYVISGWTGYFLVASLGNFYLLNRYGWPRKPQDRLSAGRPWKTARWFFRIQTVVVGVFGIMMLLLPDVAQREFWPWLVATPTLQMFAGLFLATCLATGWASLQTDIGRVRVLLPLDVIFPSLALLAVGIHWDVILSQSPSALVTGVWVFIYAFVAVGSAYLYFYSRKIVM*
Ga0066673_100008357	F017278	GAG	MSEKKNRRDEVRREAKEALEAMRKDLQQLSRDLVAASKTLKTSTEKFVQDTGPKVSAGLEETVETFRRTMTTIDKQTKPQQVKLLRTYKKFLTKQLDFIEKRLRETE*