Scaffold Ga0066673_10000610

Overview

Basic Information

• Taxon OID: 3300005175
• Scaffold ID: Ga0066673_10000610
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10905
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010715	Metagenome / Metatranscriptome	300	Y
F019298	Metagenome	230	N
F034529	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_1000061010	F034529	GGGGG	MKLVTPFKKSIKMAPEYVPGKCNIGARGRAIRLATGLGIIAVFVGLDVLALRLVFAPFRLLLVIPFYLGLLSALEGTMSFCVLHATRGTYDLHEPTGMAFGSSGTKMDVGSDEWKKLDRRKARLMHLEAVLGALVLAGLLALA*
Ga0066673_100006103	F019298	GAGG	MTFTAQRLLDTTPRWLSITLVSSSSALLISGIGLVLNLLDPFNITPFTLLLHLVWAIVVSSWVLTMKVKLPPEKKAILAIGVAVAVGSMWGAVQQWAAYLEAGVVNDITLVAGAVAMDAVGGLVVYILYHLNILGRKLGSSGPQSSPGSARTLPP*
Ga0066673_100006108	F010715	N/A	MRLFLDSGALSEELLQPREMEGKFGSMSLPPAIGMSEEEDLWVEIARFKDASHMKDVHATVAKNPHLEKLHSRFDLLITGKHVYHAEFESLQQK*