Scaffold Ga0066673_10000192

Overview

Basic Information

• Taxon OID: 3300005175
• Scaffold ID: Ga0066673_10000192
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15850
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013625	Metagenome	269	Y
F029058	Metagenome	189	Y
F029708	Metagenome / Metatranscriptome	187	Y
F038612	Metagenome	165	N
F072144	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_1000019213	F013625	GGAG	LVYSSVAYYSLSRPPSQEFMAWGVFSPNGTLSNYFSGASANVAVGQTQNWHFAITNQMGSIQYVQVVYRLANSTSADPNATVPGSAVSQLGNRSIFIPNAQTGFVNFTWSIKSTNPSPGGMVFITMTINGQQVSPSVSAIGGQGFRFFFELWTFDIASSSFQYGYQGHGSRVGLPLQVWFNSA*
Ga0066673_1000019214	F029058	GGAG	LDKALTYFSQLPSGISTQTSNVPAVPSYSYGLTVLSEQGVSAIVWATGLAYFVLVRKLRPRELFMGGLFLAAVSTIPVAVFGRADVLQRSYLFALFPFIILTAWLLERRTVLTLRGRNLFRLVKVGFIVTMVLFSAIIPLTRYGVDPIEYIPSSSLYVSNISSGLTQQHSLLFLHPDEDGWRFYAGINGAIREPKLEQKNLANQPGGYVKPSTDPTVPGFNLTYTPADGSANYVVLTTYWQNLYTLRFGSNSAIYIQARNNYTDIVMQNFNLVYSTGTDQIYANQALG*
Ga0066673_1000019216	F029708	GAG	MLFYKEHVKTLDEGSIGEAYLLLAQAGAKFFSYADRWAIFEPVYATVPDHWHRVASDLDERAQDYGQILKTPRMIIDNHDGTIVRAYPEKNEDTPGP*
Ga0066673_100001922	F038612	AGGCGG	VKKILLTLSGTHGSGKSTNAGKCYYLLNRSGYKFSYIRHQDLLDPFGFIVRRTARILHLEPNRLEKMKPTRVAWSIYLLFIYCPILVGGIKLRNLFGYSVVSDRYLYDVMVGFRDNGMTVPSENLLMRLLPRPDISFVLDAPEQRILADRPEHSGAFIRKEKILYRQVADHFNLSRISTSDPPSIVWSNMLSEIKVALGERTSVEQITLQQVIG*
Ga0066673_100001923	F072144	N/A	MKLNFLEEIGGVKTARREAESLLLATALLKNDEISVKDEDRMLKLAKKNKVLLRAATLIHLPSNVVDEAKKDAAEAFDLYDQMSNIFTQHGVSFVAIKSFDSLPDIGHDIDLLVPSPTELAETEKLLINQYKVRPQGLTHCDRLLGKFSCFLQGYNHDFELYPTISQLGETHLDPSQVLLHRRRETVEGHEVWMTSDSDRVLIRVIHAMFRHNFLKLSDILDFLKLIETASSQEVLEKIDNALIGDAFIFYLASIERFLKACQVENRRFQELKKSAQEVFGDDRLRFLRRDRLVLPYRIPTAAIIILFLIKAARDAARARWKSSIFCLVAPPLIVLDFISAAFRAGGRGGVW*