Scaffold Ga0066673_10000062

Overview

Basic Information

• Taxon OID: 3300005175
• Scaffold ID: Ga0066673_10000062
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20997
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F005236	Metagenome / Metatranscriptome	407	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F008127	Metagenome	338	N
F015713	Metagenome	252	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_1000006215	F015713	GGA	MKISWHDVAEDVEKHAHRLAEDIFALEPDVTEEVDLKALFERILGKEDWTDKLAAQLGRFKGLFHRSQKETELPEDLKQLIPNMGDVERAYVEITSGYKDFIKAVWVAQHERQWRE*
Ga0066673_1000006219	F007071	N/A	MSGLSLRLTEIRSFLLPVSQFAAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDMVAGGATTLLAFFINDLDGVAIGAIVTVAATSRLIQKLN*
Ga0066673_1000006222	F008127	GAG	MSDDFLPRAHSKRLGELERSNWKSLRDGRNIHRIDPAIREIVSLLNNKGYRTFSSCSGGHPTNPRWKVNRHESGYLAFSPPSNVAFALYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRKKHKLEHYHKLFSQMREIIEGLPRAPGNGNEVLTGLFGKGNLQTGLRIVKGQMKRFTAN*
Ga0066673_1000006223	F007642	N/A	MPSLSTREAVTVPEKPLAEVLVEGELSPFEHEVLYRILRKGFRLEHPSYAELLDEDLATRVNITFHYPYVTTVFTDVLRENWRELKELLRQVRYRRGKAGAAVTLSFLGEKNKLVFKSGVLEEKELSSALDQIGHLTGILGQMLRPETMDKPLELVEAVYDKKSDRWHEFKGFASADQNQSYVFDESVFRWIRL*
Ga0066673_100000627	F005236	N/A	MGFLSIMGKILIGLAMLTMPVAVSLILVFSETLTTIGVAISLGASIFVFFCGIYAGFLGIKYERLQQQFESFVNPLKIRPNAVNLIKAICPIDQEQIVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEVEQPAESA*
Ga0066673_100000629	F002266	N/A	LKTQGEIIEFIHDKGLVSTLGGNELPSFISCILGKPWKPSAKGFSGWLDWWSTKISGQPVAHVSRDIEGRKDILATRIFRRTKTFVSGELWPILDIIVKHHQDPAVKQQILSDIELKILETIETEGSIRTDRLRKKLKLEAKENNSKFHRSLSHLESYALIVGVEDPRPEKHLHANIWQTWDTRTHEGSGRNSLSYSEALGKLLAKTVDVCVLVREDQIPKWFEWSTDMQPVKEKLLLEGTVLRSGPYLVSSKVRDVNN*