Scaffold Ga0066673_10000007

Overview

Basic Information

• Taxon OID: 3300005175
• Scaffold ID: Ga0066673_10000007
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35426
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (59.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006887	Metagenome / Metatranscriptome	362	Y
F009738	Metagenome / Metatranscriptome	313	N
F011287	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_1000000715	F011287	N/A	MTPVQTVEQATQAAVDFIRKYYSFVYPIAARKENSRWIVDLDVSYFRPSYVRVRILAEAGSLEDFNVTLGPLL*
Ga0066673_1000000721	F009738	GGAGG	LRQIQEMSRQTPKQQAKEETADTASFRPVGLSISSFFYALSGIYYLAFPIVAQDTLAYHLYAIGAASLLGSLGVFMMTRWGLWLGLLLFPLQIVAPASTLLTVVSYPGLWQQPIYIAFVASLFVLMFFASLTFLLVLDKRRSFN*
Ga0066673_100000077	F006887	AGCAG	VTDTQYPEGFTDFLDFLCEKHGVHRNRVFIEYSSKPSPPIRGGRPGYYDGLLSSRQKEGHVEFLITVFKIARDPLLTLGHEFAHLVDDLKSGKVGKPLGPPDDARERKFDNQALRDLNAFWMQRKIGASKRDEQPVGIQDAIPEG*