Scaffold Ga0066680

Basic Information
Taxon OID	3300005174 Open in IMG/M
Scaffold ID	Ga0066680_10011468 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005174 Open in IMG/M

Scaffold ID

Ga0066680_10011468 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4574
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4574

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066680_100114683	F006952	GGAGG	VGPLATANHEIREAERSEQERRLARLVEPRRLTDRLLNQLEELNLEDVHLVPDDYEPTLAELRTHLAGWAGVERSLIDRLQSGTGTAELIETIFNIQEVISPPTLPPGTLPVDDLEL*
Ga0066680_100114686	F004349	AGGA	VIVGRWLVLSTAALMLSACGNVASTPVKPPTAQEILDKPDKANVRDAHFTLMAHIVSGNTAFDASGDGIIVIKPQQASQFTMQTTVAGQILKFQEIIIGGKEYDLSPDNPRWTVKSSTTSSNPSSFKGTDASYLGEEALSRGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTAQGSTLTATFDRFNTGETVSAPPASDIQR*
Ga0066680_100114687	F004003	GGA	MTAPVIAQLTALTISAAVLAACGGPGAPLGPPSPKDILAKPLHANLKDAHFIVSGKIAEQGSVDLAGDGELVYKAPGAGRFKFQTTVAGQKVSYEDISINGKDYTFSDPGTGKWIERATTSGLGPASFSGVSDFNYVGEENLAKGKAWHAKAKDKDGNAFEGWIRESDGYPLKYLIAQQANALTLTFDRFNAGVTISPPPASQVVQG*
Ga0066680_100114688	F004186	GAG	VLAKPQQSNLKDAHFKVTGKITDNGVTVELLGDGALVYKPKPQGRFKFQTTVGGETITIEEISLDGTNYGLTPGNPKWVATKSTSGIDPTAFRGASDQKYVGEQNLPQGKAWHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066680_10011468

Overview

Ecosystem & Geography

Associated Families

Sequences