Scaffold Ga0066680_10001122

Overview

Basic Information

• Taxon OID: 3300005174
• Scaffold ID: Ga0066680_10001122
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10500
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000484	Metagenome / Metatranscriptome	1088	Y
F001801	Metagenome / Metatranscriptome	632	Y
F045040	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066680_1000112210	F001801	N/A	MKIFFRHLVLCALPLACGVGAGYGFTMIQGSCSAMVGAIFSAKCHGRQREYQIKFQLAGAGAGTLIAATLGTWLEHRRRRAVQPATQEGETS*
Ga0066680_100011222	F045040	GGAGG	MRTSTAVVLLLLVTACGGKPEKSSAAPGDTLTERQRDSMLAASRIPGARGVGAAMRYADSTSAHIRATDSVTQ*
Ga0066680_100011223	F000484	N/A	MHLSVRYAQRYAGRWKVAHGDTLTLPQLGDRFKLSDVVLDTTRSVVGKTCRFRGKLVFTVPRDTLAVTWIGFPEQALIYGWPSELGPFAGIGAVRVGDSLTGEILFDQRLNVEVRPGVTARFTAGRARD*