Scaffold Ga0066683_10000343

Overview

Basic Information

• Taxon OID: 3300005172
• Scaffold ID: Ga0066683_10000343
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13851
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001330	Metagenome / Metatranscriptome	721	Y
F037649	Metagenome	167	N
F088599	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066683_1000034311	F088599	N/A	MTTRTCGAAAFAVAAAVACNKGLEPALAPTSCPQGFVGVCGTVSFVGQVPESTARVFVVAFDTFPKSQNDLFKFKPQPTPPNLPLGGPAFFYTLPLPPARYEWVLAVWQKQGTLSPTNADSLLRETGFYRDKGDTTAHGSGIVIVNAGTGKDSIDFVVDFNNMHRVCYYFPPCP*
Ga0066683_1000034313	F001330	N/A	MLGPPLLPLVMTLCWGALQGGPIDGTWELARIFRSGPAAASHTVPIDSTVYLRLTLKTMPGEWIDGRLYRRYHGREERGRIEAGPLRGTGRYIIGADLENPVSQKARTAAWLVGDTLRLGTPFVPDADSLELRRVTTDAPYPTTVLEVVTGR*
Ga0066683_1000034314	F037649	AGG	MTRCSATVSRVTPFLLTSLAVGCGGDRSRSPTCGLALLVGPRLIQQQLSVLPYVLTDAPRGLSASLPALVAGTAQQGEVAVAYGGQRLILTYQGPNFPPFPTDSAVYALLVVDDSTQRAQGVLIYESVRPPPTFPQLGTVKGGGGDKTIPLYGVRVDWPSVSNPRCPLLGAPAPAPR*