Scaffold Ga0066677_10034329

Overview

Basic Information

• Taxon OID: 3300005171
• Scaffold ID: Ga0066677_10034329
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2452
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F006952	Metagenome	361	Y
F061378	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066677_100343291	F061378	GGCGG	VPTPAAPTAKDVLAKPQQSDLKDAHFTVTGKITDNGTTVELVGDGALAYKPKLAGRFKFTTNVGGQPVTIQEISLDGTNYGLTPASPKWVATQSTSGIDPSAFVGASEQKYVGEENLPQGKAWHATAKDKDGNAFDAYIREKDGY
Ga0066677_100343292	F004003	GGA	VVARLTRIAVVVVATGLLAACGGPGAPLGPPSAKDILSKPLHTNLNDAHFVVSGKFVSSTPGGVAVDVHGDGALVYKNAGAGRFKFETTVAGQKVSYQDISVGGVDYTFVVPGNGKWTAKTTTSGLGRDSFTGASDFAYVGEENLPTGKSWHAKAKDKDGNQFDGWIRESDGYPVKYEITQQGNALTLNFDKYNTGESITAPPASQVVQG*
Ga0066677_100343294	F006952	GGAGG	VIGPLGSANREIREADRRDQLRRRARLAEPRRLTDDLLHQLEELNLDGVGTVPDGYESALAELREQLEALAKVRPRLIEQLQPGARTAELIDIVFIIQEIIAPPRLPSGSAAIDDTGIV*