NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071327_1279096

Scaffold Ga0071327_1279096


Overview

Basic Information
Taxon OID3300005170 Open in IMG/M
Scaffold IDGa0071327_1279096 Open in IMG/M
Source Dataset NameWorm MetaG Olavius vacuus BAHAMAS.1 (version 1)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. INlla18(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001963Metagenome610Y

Sequences

Protein IDFamilyRBSSequence
Ga0071327_12790961F001963N/ALIDTAGNVSVLCVVVSVRGVTLLHDVVYVVCRWFSTITRFNATTHQPLTDINVPDLREPSDIVACERTSQLYVAEWKCVWRVSTDGTDIKHWLPKSRDDTFKPETLSVTSTRLLVTSGYTRQLRQFDADGDELRCVQLPDHIEPQHAVESPTGTFIVSLYNEQLKQRQVVEVNTGGEVLRQFGGSRLTSLNFTEHVAVDSHGNIFVADDDNRDILLLDNHLSLRRVIIDEHQLSYE

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