Scaffold Ga0071327_1249404

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071327_1249404

Scaffold Ga0071327_1249404

Overview

Basic Information
Taxon OID	3300005170 Open in IMG/M
Scaffold ID	Ga0071327_1249404 Open in IMG/M
Source Dataset Name	Worm MetaG Olavius vacuus BAHAMAS.1 (version 1)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	860
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Germany: Marburg
Coordinates	Lat. (^o)	50.8	Long. (^o)	8.81	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003742	Metagenome	471	Y
F056951	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071327_12494041	F056951	N/A	MSMDSITEVFYRLNIMLLATKHIADDNFLSVRQRTGTSCMQHSPNLSTSLFLTYDPKSPDVIGE
Ga0071327_12494042	F003742	N/A	MCAPNKTKKGNKAFSYLFRTHLLITASVMVSGRLGAKSRMEVFLHQA*

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