NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071327_1039391

Scaffold Ga0071327_1039391


Overview

Basic Information
Taxon OID3300005170 Open in IMG/M
Scaffold IDGa0071327_1039391 Open in IMG/M
Source Dataset NameWorm MetaG Olavius vacuus BAHAMAS.1 (version 1)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3245
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001963Metagenome610Y

Sequences

Protein IDFamilyRBSSequence
Ga0071327_10393916F001963GGAMGVTKIRDVVYIVCWLSSTIMRFNARTRQRLTGFFNVKELRQPRDLVVCERTSQLYIAEYNKCVWRVSSDGTDLKHWLPKSPDDTFKPWTLSVTSTRLLVTSRDTSQLRQFDADGDELRRVQLPYHMEPQHAVESPTGTFIIGLYNTQLKQNQVVEVNTGGEVLRQFSGSHLTSLGRTPHVAVDSHGNIFVADQDSRHILLLSAHLSLRRVIIDEHQLNCKPPYRLCYREDTGQLLVGFDYHSRDTNVVCLMCFVV*

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