Scaffold Ga0071327_1014522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071327_1014522

Scaffold Ga0071327_1014522

Overview

Basic Information
Taxon OID	3300005170 Open in IMG/M
Scaffold ID	Ga0071327_1014522 Open in IMG/M
Source Dataset Name	Worm MetaG Olavius vacuus BAHAMAS.1 (version 1)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4915
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Germany: Marburg
Coordinates	Lat. (^o)	50.8	Long. (^o)	8.81	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056951	Metagenome	137	Y
F068202	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071327_10145225	F056951	N/A	MSMDSITELFYHLNIMLLATKHIADNNLAFSKTAHWHVFMQHSPNLSTSLFLTYDPKSPDVIGEHH*
Ga0071327_10145226	F068202	N/A	MSRDSTSLKKSSGDCLNLAKQRYNILSEMMLFRNYCIFSGSAEALLGVVGNYSIY*

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