Scaffold Ga0071327_1013227

Overview

Basic Information

• Taxon OID: 3300005170
• Scaffold ID: Ga0071327_1013227
• Source Dataset Name: Worm MetaG Olavius vacuus BAHAMAS.1 (version 1)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5083
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003742	Metagenome	471	Y
F056951	Metagenome	137	Y
F068202	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071327_10132271	F068202	GAG	MNMSHDSTSLKKYSGDCLKLAKQRYSILSEMMLFRNYCIFSGST
Ga0071327_10132272	F056951	N/A	MSMDSIIEVFYYLKIMLIATKHIVDNNLAFSKTAHWTSCMQHSPNLSTSLFLTYDPKSPDVIGEHHCL*
Ga0071327_10132273	F003742	N/A	MCAPNKTKKGNNAFSYLFRTHLAITISTMVSGRLGAMSRMEVFLLEA*