Scaffold Ga0066672_10045355

Overview

Basic Information

• Taxon OID: 3300005167
• Scaffold ID: Ga0066672_10045355
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2494
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008075	Metagenome / Metatranscriptome	339	N
F013400	Metagenome / Metatranscriptome	271	N
F104877	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066672_100453551	F013400	AGGAG	MADATLLTGMWIIAVLQLILEAGIVFYAYRLTRLTGSFRAWTMIILAFILTTASSVFGIFLLLLNPDLIAGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFKLAAKKPPGANASTF*
Ga0066672_100453555	F008075	AGTAG	MKSLQDSAKEMRESLEFANMFQLSVAEGLANTLGSIVMQTLKTLLSHTLETYAEKPSELHRELSRVFGSAATTLERMITKELFQRLSLRYSNELDFETSVNLARRDMILSERGNN*
Ga0066672_100453556	F104877	N/A	SSSRLLIYKTVVELYEEYSVRATFGFYDSLRDQILYLRERVLADIIKPRHSPTIDDSIYITRPIG*