Scaffold Ga0066672_10002585

Overview

Basic Information

• Taxon OID: 3300005167
• Scaffold ID: Ga0066672_10002585
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7258
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038166	Metagenome	166	Y
F041634	Metagenome / Metatranscriptome	159	Y
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066672_100025853	F041634	GGAGG	MAKPRPEKERGKDRGDQPPLPGTRASSSSSTTRILPMQLQIGDRLSDETGEWEVVNRPHTTAGGKTAHARVRRVDQPAVIEERTWGAHERVVVKRG*
Ga0066672_100025855	F038166	AGGAGG	MMRLRRTSVIVMLTLLASAATAYAECAWVLWQQQAEIAPGGSVSSSDWTWLTAEATSTEAECRQASARFDTSLGPKDADGYSTVTSKGKKVRVRNVCLPDGTDPRGPKGK*
Ga0066672_100025856	F104063	N/A	MSRVVVAAGIVGLLLFVEPPLDGLAGYLLFEEGHRIIGTIVVSVNAVIAAGVLFSFLPEWFHPRGLMLAAAIAHYNVNVWLGLVALVYAVAVGAWPPALVLLVGAVLVAIGGRGVVAWLSSGRSRL*