Basic Information | |
---|---|
Taxon OID | 3300005167 Open in IMG/M |
Scaffold ID | Ga0066672_10002115 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7764 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001249 | Metagenome / Metatranscriptome | 737 | Y |
F009437 | Metagenome / Metatranscriptome | 318 | Y |
F016044 | Metagenome / Metatranscriptome | 250 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066672_100021151 | F016044 | GGAG | MGLALRPTGLNPPADKDRSDYTLFSGEFAVGRIYEERGAPADVQWFWAITGIFGAPADMRMDGHAPTLESAQAQLGESWRKWLAWAKLAEIEG* |
Ga0066672_100021152 | F009437 | GGAGG | MSYASYCQDQATACARRARLASSPEIVAYCRNLQFRWLRLAAQAQATGGALGRESAPAASLGDTTAATCPVEYGKRAGELIARGARSLHSTLRQKKFEAERCVR* |
Ga0066672_100021153 | F001249 | GAG | MMGALRYKVSPGETIMVKHGALSKSHVYKLLRSKDARVRRAAFTLLETSNPRLRRNSELFIEITRFIWDANPSYDVYREFTKRHFQARYKVHELIGARLKIEKQKQQSAAAEELTGNARGCEGGFFQRLFLRPSRS* |
⦗Top⦘ |