Basic Information | |
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Taxon OID | 3300005166 Open in IMG/M |
Scaffold ID | Ga0066674_10115805 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1251 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008842 | Metagenome / Metatranscriptome | 327 | Y |
F031442 | Metagenome / Metatranscriptome | 182 | N |
F097011 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066674_101158051 | F031442 | N/A | MVVPSLDTEHPGIRVIAEVASVLQAGLASGEALHGVVSALRRGLNLRRCRLWLRTPDGTRFTPVTTPGDEAEPSSHAPPVAEWMRRGPQREGVPGGWIVRLPLVHEDEPLGVLEV |
Ga0066674_101158052 | F008842 | N/A | MLTALVSLSTPLAGQGNALTLGLAYTVGSGWQVEGFDVGVARAVRAGPIAALSLTARLGSFIDEGAIIGGARGFVFGTTLAARTPTATIAELGADTSASRVGVDLTVEATGYLGSRSPLPVGSPWGGVSVLPGLRFGDPNGPRLGVLIGPTVFLGTVTDVRAFLGVRFEAPLARRERHP* |
Ga0066674_101158053 | F097011 | N/A | MDRRTFVLLTGAGSAALIRPPDRLSLGPPRADGRTGARADGRLRFELDDHHRWSLWYYGDGSPVPLVRDAEIVAWVGDRPLTLADLEDSTVGNRRPPGGDAVVVRGRAAGVWVEAE |
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