Scaffold Ga0066674_10004855

Overview

Basic Information

• Taxon OID: 3300005166
• Scaffold ID: Ga0066674_10004855
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5200
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014831	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066674_100048551	F014831	N/A	QLGALNVPAAVPVLVKATVPAGVLAPAPLVSATVAVHVEGWLIATVAGEHVMLVEVVLSRPFTVPLLAPLLELPA*
Ga0066674_1000485511	F014831	AGG	MVAVPAAVGVNVTEQLPLERVQLVALKVPARPVAVKATEPAGVVAPAPLVSATVAVQVDDWLIGTEAGLQTIVVEVVRSVAVTVPLVAPLLELPACTASLAV*
Ga0066674_1000485512	F014831	AGG	MVAVPAALGVNVTEQLPLTSVQLVALNVPARPVAVNATEPAGVVAPAPLVSATVAVQVEAWLMATVPGLQTIVVEVVRRVAFTVPLVAPLLELPACTESLGV*
Ga0066674_1000485514	F014831	N/A	MVAVPAALGVKVTEQLPLTNVQLVALKLPARPVAVKATEPAGVVAPAPLVSATVAVQVEGWLTATVPGLQTMVVDVVLRVTVIEPLLAPLLELPA*
Ga0066674_100048552	F014831	GAG	VYVPLIVAVPAALGVNVTEQLPATFNVQLGALKVPARPEAVKATEPAGVDAPAPLVSATVAVQVEGWLIGTEAGLQTTVVDVVLAVTVTVVAPELGA*
Ga0066674_100048554	F014831	GGTGG	VVVGVKLTEQLPPERVQLEVLKLPAPPVAVNETDPAGVVAPAPLVSPTVAVHCEGVPIGTLDGLQTIVVDVVRSVAVTVPLLAPLLELPA*
Ga0066674_100048555	F014831	AGG	VAVPAALGVKVTEQLPLTRVQLVALNAPARPVAVNATEPAGVVAPAPLVSATVAVHVDGWLIATVPGLQTIVVEVVRNVAVIEPLLAPLLELPA*
Ga0066674_100048556	F014831	AGG	MVAVPAALGVNVTEQLPLTSVQLVALKLPARPVAVNATEPAGVVAPTPLVSATVAVHVEAWLMATVLGLHTMVVEVVRSVAVMIALPAPLLELPA*
Ga0066674_100048557	F014831	AGG	MVAVPAALGVNVTEQVPAPDRVQLVALKVPARPVAVNATEPAGVVVPAPLVSVTVAVHVEGWLMAMVLGLHTMVVDVVLRFDVMEPFPAPLLELPACTASLAV*