Scaffold Ga0066823_10015752

Overview

Basic Information

• Taxon OID: 3300005163
• Scaffold ID: Ga0066823_10015752
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHMB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044630	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066823_100157522	F044630	AGGAGG	MRLATIAAMTVLVVLPAGAVQQRYQTASLTPTCDNDGRCTTANTIAPMGPDFIEALESKPSVEAAARRPRSLDANGNSAGGMVISRKTGARARVGVAYAARFQAYIDDLENNHGARVLFMGGIRPGRCSPSSEHPCGKALDVCQLRRGVVDARCNLPGRFTLGRVAAAHGLFEGGRWCNSDYGHAQVDVTAAACGERGVRMVQRQSRSVQLQER*