NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066814_10015566

Scaffold Ga0066814_10015566


Overview

Basic Information
Taxon OID3300005162 Open in IMG/M
Scaffold IDGa0066814_10015566 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLAB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)999
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036461Metagenome / Metatranscriptome170Y
F078687Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0066814_100155662F036461N/AMIGGNSLNEIVLFEVPAQSGATQLLSELSTSRLAWMERGDDVSVIGVLLNPDEDDLAHLLREVEAWVGTRGLLAVRFEVDGRTYVLHNPVLAEQAHTAA*
Ga0066814_100155663F078687N/AMPPLDEFARRRLGRALVSLEGAIARFEAHGNGDVEPNVNRLKRLADDIRAVLRLAHDKAPRT*

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