Scaffold Ga0066814_10000507

Overview

Basic Information

• Taxon OID: 3300005162
• Scaffold ID: Ga0066814_10000507
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgLAB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2436
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066814_100005072	F004352	GGAGG	MISRPDQDGDQQLRLLGDAWDKAAEHWRDGPARQFGDGELASLLDESRSYLEALRKLTDLLETAERETEG*
Ga0066814_100005073	F002850	GGA	VTGIHADIDALKGLHQALVRYRHAQRDVIARGEDQLTATRASLEARAGRLRAQLELGQAEYTACQDRAAQADPDNPVDCSGYARAVEQNSQRLEQIRLWQQRIDAEASEFSGIAGRFADLLENGLPRMEEHLVAMIASLEAARRVQPAAS*
Ga0066814_100005074	F001698	AGGAG	MAGVVNDIEALAEFRAHLMRFNHDLAENFATIQAHWRELGEIWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEVRRGMAGGTRQGTGRRDRDSR*