Scaffold Ga0068713_1109645

Overview

Basic Information

• Taxon OID: 3300005145
• Scaffold ID: Ga0068713_1109645
• Source Dataset Name: Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Arthur Kill intertidal strait
• Coordinates
  • Lat. (^o): 40.58
  • Long. (^o): -74.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088360	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068713_11096451	F088360	N/A	IWIISWAWRRSRAWNRRLPSMTRHDRQFIVRLSVILFLLAGIAWQIYEAVYAVQSPSVQLGGFAAGDLAALPVLLFPPALFFAALALEFSPGAHRVAWGLVAFLAGAGCVYSLATATLGTAGNLNLSYYILLGVLALVSAPRAFASSRTGWSRRGSPYYS*