Scaffold Ga0068713_1001817

Overview

Basic Information

• Taxon OID: 3300005145
• Scaffold ID: Ga0068713_1001817
• Source Dataset Name: Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25245
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Arthur Kill intertidal strait
• Coordinates
  • Lat. (^o): 40.58
  • Long. (^o): -74.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072483	Metagenome	121	Y
F097618	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068713_100181721	F072483	GGAG	MKGYVSVHKVGDRQIFANTAKFRIYARLQGFISEGFFHNGQSALDATFALLAALNAPHIDYIFDMRFSEEFPRDIFQMWKEKALENLAKYPEVNVVGVTHHDSPLWLQISEWKELFEKHGDRILGTFDTPEEAEAFLDRLRNVKAQ*
Ga0068713_10018174	F097618	AGGAGG	MSEEKAQKLTEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMQKAA*