Scaffold Ga0072934_10460556

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072934_10460556

Scaffold Ga0072934_10460556

Overview

Basic Information
Taxon OID	3300005101 Open in IMG/M
Scaffold ID	Ga0072934_10460556 Open in IMG/M
Source Dataset Name	Microbial Community from Halfdan Field MHBA7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	500
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	North Sea, Denmark
Coordinates	Lat. (^o)	55.49	Long. (^o)	7.42	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027047	Metagenome	196	Y
F094638	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072934_104605561	F094638	AGCAG	MSDGSNEVVRELTKLSTKMDMVCADVSELKTMTRNYLERLTILEERVRSLEDWKDEVTNYDRLKERVKHDFRSAVAGGVAGGLVGVVDS
Ga0072934_104605562	F027047	N/A	LSTYVKKNLNKDNPQSFDTAKFITTVVCGAIVGLVLQYSGINITEQTVEQQFITYAGLIAITENIVKAIIRAIKQWYHVRWE*

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