Scaffold Ga0072682_122509

Overview

Basic Information

• Taxon OID: 3300005099
• Scaffold ID: Ga0072682_122509
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4902
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F019588	Metagenome	228	N
F019935	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_12250915	F019935	N/A	MPKVKETANRVVVHVGEWWKRYHRASPKVRKRWKFRIKDVGRTKHSELILCKPPNKDWQVYAWSFSKKQVKKGKRRLLVYDVKAFEILQKLKESGELRGWKLVFRG*
Ga0072682_1225094	F014691	AGGAGG	MSKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQVDTSLGNTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR*
Ga0072682_1225096	F019588	GGAGG	MCEEERIEEEVKEVLEQLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVRDLLK*