Scaffold Ga0072682_120910

Overview

Basic Information

• Taxon OID: 3300005099
• Scaffold ID: Ga0072682_120910
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3351
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F015290	Metagenome	255	N
F024453	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_1209102	F007460	GAGG	MDDEEGIGMGTAIFVVMLNIVFAIIFFFLIGSVMCGILPPLTSIVGVDEGTPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHRYTYYQQGGEEEW*
Ga0072682_1209103	F015290	GAGG	MLNNKGQAGEIAVFVILVFMIAFAYIFTSPIVQNIKDVIPTVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVM*
Ga0072682_1209104	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGGEISEVGEGGESGREEEIQKDMEKVRSVHELAQVRKVNAKQ*