Scaffold Ga0072682

Basic Information
Taxon OID	3300005099 Open in IMG/M
Scaffold ID	Ga0072682_117979 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005099 Open in IMG/M

Scaffold ID

Ga0072682_117979 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23430
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23430

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F050821	Metagenome	144	N
F056227	Metagenome	137	N
F059532	Metagenome	133	N
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_11797915	F038026	GAGG	MLKFMIDRYGNEYNLIIEYKDRAERLIVKNLKDLLQVMADTTLYNFEYKSKYFEQPNYAKVEILWNSE*
Ga0072682_11797922	F056227	N/A	MEDKDNIQVLVFHRDKEDKNWISRLKNGKIAILHRADTTTPQPNVPYLCKVDEKETYAIAWIQSLYAYPRVIVTPPPRRYVYLESPGDKPSIHTDILNVFDTHDLEYLYVKYPKENRKEIDTPSTESYRDIEIDVRIKIGSESTLKSSFSIKRPRNVDAKTILDEIKNKIK*
Ga0072682_11797923	F059532	GAG	MKNILLLGDLHCGSIEGLWHPDCITREGQKIKLSPLQEELYEKWLELQEKLPNYDAVFLMGDIVHGLGSKEFGKDVIDCDLHDQLQCAVKLLKPIVENKKVVVISGSRYHSSIDYDMDRGLAEVLHAKFGGAISNVRLKGTGVIINIAHGVGSRPVYLGTRMNQDIFNAVLTEHFLKMPDVSVIVRAHFHVYSYFSICNKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSVDDNDNIYVKPYLFKLKSERKNIYVL*
Ga0072682_11797924	F100149	AGG	MFWSEEEIEILKSLWVRPDITSKFIKERYLPHRTINAIQKKASSLGLAKEKIKIDYDKIREIIL*
Ga0072682_11797933	F050821	GGA	MIVKEMYCNHCKRKTFHECQSNELWRCIQCHNTQFEILDIKEDEIDWSTPTRYVYRSGELAYITLALAPDILRLNELKNLIEGKRVRVPLFKIKDEFLPKYY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072682_117979

Overview

Ecosystem & Geography

Associated Families

Sequences