Scaffold Ga0072682_112740

Overview

Basic Information

• Taxon OID: 3300005099
• Scaffold ID: Ga0072682_112740
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5923
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_1127403	F091133	AGGGGG	MGIFDVWSSWTDWLSDWWDAFKDKIWDIKVELWSWVDDIAKYWVKQADMFFDILKHTWSEVEDLMEEAKSYADDIVTDAILKIDNWVATFGETVAELWEKLEPYFSSVITPIENALDTIQNIKIPSLEDITNTLKITVDNVVNWDIPFLNQSVNDLWNEANEIWNEIWNNIWTSLNNAWDDINNIWNTFAEIPADVWNAITQGWEGFTDFLFEQGERFVEKILDIDIPVDDIIEDLERKFKGGRE*
Ga0072682_1127406	F009582	N/A	MRERGRRREFIGGTGRAVKEAKVDVVLQRVEEKIGEEINTFPKHIRRYGVNNIFQRTFAYLLGWRTDGTPQKVAVTSSGLLKVGIAGAGFEEIDVLQGTATVEWSDVLEFSFVPNRIRFESLDYPYCVKFSKDKITWSDAVYVDEDTPRDYDICAKYVKVRRYGGTNAKYWVVGMR*
Ga0072682_1127407	F011723	AGGAGG	MVIYNKGLALENSTDEGKTIFTLTSKEEEKYKVRRILITDVWNYSLYMEVWVEREKICDALPLTAKTGIMPERVIDIDVEVPVGYTFSVIIKPQTSGNQGCVSGWVEYEIIE*